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1

CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers

Ounit, Rachid, Wanamaker, Steve, Close, Timothy J, Lonardi, Stefano

Journal:

Year:

2015

Language:

english

File:

PDF, 2.68 MB

english, 2015

2

[ACM Press the 5th ACM Conference - Newport Beach, California (2014.09.20-2014.09.23)] Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics - BCB '14 - CLARK, accurate and efficient classification of DNA sequences

Ounit, Rachid, Close, Timothy, Wanamaker, Steve, Lonardi, Stefano

Year:

2014

Language:

english

File:

PDF, 154 KB

english, 2014

3

BRAT-nova: Fast and accurate mapping of bi-sulfite-treated reads

Harris, Elena Y., Ounit, Rachid, Lonardi, Stefano

Journal:

Year:

2016

Language:

english

File:

PDF, 268 KB

english, 2016

4

Higher classification sensitivity of short metagenomic reads with CLARK- S

Ounit, Rachid, Lonardi, Stefano

Journal:

Year:

2016

Language:

english

File:

PDF, 93 KB

english, 2016

5

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

McIntyre, Alexa B. R., Ounit, Rachid, Afshinnekoo, Ebrahim, Prill, Robert J., Hénaff, Elizabeth, Alexander, Noah, Minot, Samuel S., Danko, David, Foox, Jonathan, Ahsanuddin, Sofia, Tighe, Scott, Hasan

Journal:

Year:

2017

Language:

english

File:

PDF, 2.58 MB

english, 2017

6

Metagenomic characterization of ambulances across the USA

O’Hara, Niamh B., Reed, Harry J., Afshinnekoo, Ebrahim, Harvin, Donell, Caplan, Nora, Rosen, Gail, Frye, Brook, Woloszynek, Stephen, Ounit, Rachid, Levy, Shawn, Butler, Erin, Mason, Christopher E.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.33 MB

english, 2017

7

Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

McIntyre, Alexa B. R., Ounit, Rachid, Afshinnekoo, Ebrahim, Prill, Robert J., Hénaff, Elizabeth, Alexander, Noah, Minot, Samuel S., Danko, David, Foox, Jonathan, Ahsanuddin, Sofia, Tighe, Scott, Hasan

Journal:

Year:

2019

Language:

english

File:

PDF, 254 KB

english, 2019

8

Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

McIntyre, Alexa B. R., Ounit, Rachid, Afshinnekoo, Ebrahim, Prill, Robert J., Hénaff, Elizabeth, Alexander, Noah, Minot, Samuel S., Danko, David, Foox, Jonathan, Ahsanuddin, Sofia, Tighe, Scott, Hasan

Journal:

Year:

2019

File:

PDF, 254 KB

2019

9

1154. Comparison of Five Testing Modalities for the Assessment of Patient Environment Cleanliness

Salsgiver, Elizabeth, Martin, Elena, Callan, Katrina, O’Hara, Niamh B, Ounit, Rachid, Westblade, Lars F, Mason, Christopher E, Simon, Matthew S, Saiman, Lisa, Furuya, E Yoko, Calfee, David P

Journal:

Open Forum Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 235 KB

english, 2018